The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1850
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 361280
End posion on genome 361204
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
cttttcgggt
tRNA gene sequence 
GCCCCGGTGGCCTAGCCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGCGCCAa
Downstream region at tRNA end position 
ttacctttcc
Secondary structure (Cloverleaf model)
>At1850	Arg	GCG
                   t      CCAa ttacctttcc
                     G   G
                     C   C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    C - G
                    G - C
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGCCTAGCCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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