The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1852
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 556240
End posion on genome 556163
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
tttcgagtat
tRNA gene sequence 
GGACCGGTAGCCTAGCCAGGATAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCAA
ATCCCCGCCGGTCCGCCA
Downstream region at tRNA end position 
agttcttttt
Secondary structure (Cloverleaf model)
>At1852	Arg	CCT
                   t      GCCA agttcttttt
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCGGTAGCCTAGCCAGGATAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCAA
ATCCCCGCCGGTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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