The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1862
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1443697
End posion on genome 1443610
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gtggatgtga
tRNA gene sequence 
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGCCGGACTTAAGATCCGGTGCCGTAGGGCTGC
GCGGGTTCGAATCCCGCCCCCCGCACCA
Downstream region at tRNA end position 
tctcttctta
Secondary structure (Cloverleaf model)
>At1862	Leu	TAA
                   a      ACCA tctcttctta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        G      | | | | |     G
  T         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGCCGTAGGGCTGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGCCGGACTTAAGATCCGGTGCCGTAGGGCTGC
GCGGGTTCGAATCCCGCCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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