The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1865
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1464290
End posion on genome 1464214
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
gacctttaga
tRNA gene sequence 
GCCCGGGTAGCCTAGCCTGGTGGGGCGGGGGACTTGTAATCCCCAGGTCGCGGGTTCAAA
TCCCGCCCCGGGCTCCA
Downstream region at tRNA end position 
atggggccgt
Secondary structure (Cloverleaf model)
>At1865	Thr	TGT
                   a      TCCA atggggccgt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T G        G     AGGTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTAGCCTAGCCTGGTGGGGCGGGGGACTTGTAATCCCCAGGTCGCGGGTTCAAA
TCCCGCCCCGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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