The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1867
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1534784
End posion on genome 1534697
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
cttgatccct
tRNA gene sequence 
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCGGGATTCAGGGTCCCGTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position 
gtatttacgc
Secondary structure (Cloverleaf model)
>At1867	Leu	CAG
                   t      ACCA gtatttacgc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     A
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGTAGGGGTTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCGGGATTCAGGGTCCCGTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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