The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1868
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1537150
End posion on genome 1537064
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tagggtgtat
tRNA gene sequence 
GCCGGGATAGCCTAGCCTGGTAGGGCGCGGGCCTTGAGAGCCCGTGGGCGTTTGCCCGCC
GGGGTTCAAATCCCCGTCCCGGCGCCA
Downstream region at tRNA end position 
gaataaatct
Secondary structure (Cloverleaf model)
>At1868	Ser	TGA
                   t      GCCA gaataaatct
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGCGTTTGCCCGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGCCTGGTAGGGCGCGGGCCTTGAGAGCCCGTGGGCGTTTGCCCGCC
GGGGTTCAAATCCCCGTCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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