The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1874
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 483329
End posion on genome 483406
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
cttctcgggt
tRNA gene sequence 
GCCCCGGTGGCCTAGCCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGGCGCCA
Downstream region at tRNA end position 
actcccctag
Secondary structure (Cloverleaf model)
>At1874	Arg	GCG
                   t      GCCA actcccctag
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    C - G
                    G - C
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGCCTAGCCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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