The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1876
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 505823
End posion on genome 505910
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
cacttgaagt
tRNA gene sequence 
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGGGGGACTCAAGATCCCCTCCCGTAGGGGTTC
CGGGGTTCGAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position 
ttttggttgt
Secondary structure (Cloverleaf model)
>At1876	Leu	CAA
                   t      ACCA ttttggttgt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     G
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGTAGGGGTTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGGGGGACTCAAGATCCCCTCCCGTAGGGGTTC
CGGGGTTCGAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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