The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1878
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 539375
End posion on genome 539452
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
taatgggtct
tRNA gene sequence 
GCCCCGGTGGTGTAGCCCGGCCAAACATGCGGGCCTTTCGAGCCCGCGCCCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
ggaattttca
Secondary structure (Cloverleaf model)
>At1878	Glu	TTC
                   t      ACCA ggaattttca
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G         | | | +                 T T
  G         A C A T
    C C A A        G     CGCC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGTGTAGCCCGGCCAAACATGCGGGCCTTTCGAGCCCGCGCCCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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