The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1881
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 671854
End posion on genome 671931
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
ttttgggcat
tRNA gene sequence 
GGACCGGTAGCCTAGCCAGGACAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCAA
ATCCCCGCCGGTCCGCCA
Downstream region at tRNA end position 
gatttctttt
Secondary structure (Cloverleaf model)
>At1881	Arg	CCT
                   t      GCCA gatttctttt
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A C A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCGGTAGCCTAGCCAGGACAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCAA
ATCCCCGCCGGTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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