The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1887
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1329717
End posion on genome 1329792
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
ttttgggcgc
tRNA gene sequence 
GCCGCCGTAGCTTAGCTGGTGGAGCGCCGGACTGTTAATCCGGCGGTCCCCGGTTCGAAT
CCGGGCGGCGGCGCCA
Downstream region at tRNA end position 
aagaggaatg
Secondary structure (Cloverleaf model)
>At1887	Asn	GTT
                   c      GCCA aagaggaatg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G G C C     A
      C G A        A      | | | | |     G
    T       T T C G       C C C G G     C
    G       + | | |                 T T
    G       G A G C
      T G          G     CGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTTAGCTGGTGGAGCGCCGGACTGTTAATCCGGCGGTCCCCGGTTCGAAT
CCGGGCGGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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