The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1891
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 127251
End posion on genome 127175
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ctgcttaggt
tRNA gene sequence 
GGGGCGGTAGCTCAGCCTGGGAGAGCACCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCCCGCCCCACCA
Downstream region at tRNA end position 
gaattgtgcg
Secondary structure (Cloverleaf model)
>At1891	Phe	GAA
                   t      ACCA gaattgtgcg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        A     GTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCGGTAGCTCAGCCTGGGAGAGCACCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCCCGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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