The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1895
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 613172
End posion on genome 613095
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position
gtcttaaggt
tRNA gene sequence
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCTTGGCAAGGCGGAGGCCCCGGGTTCAA
ATCCCGGCCGGTCCACCA
Downstream region at tRNA end position
caaattttgg
Secondary structure (Cloverleaf model)
>At1895	Ala	GGC
                   t      ACCA caaattttgg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T A T          G     AGGCC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGTATGAGCGCCGCCTTGGCAAGGCGGAGGCCCCGGGTTCAA
ATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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