The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1897
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1039308
End posion on genome 1039231
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
aggtgcggga
tRNA gene sequence 
GGGCCGGTAGTTTAGCCAGGATAGAACGCCGCCCTCCGGAGGCGGAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Downstream region at tRNA end position 
tcacttccat
Secondary structure (Cloverleaf model)
>At1897	Arg	CCG
                   a      GCCA tcacttccat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T T T G       C C G G G     C
  G         + | | |                 T T
  G         G A A C
    A T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTTTAGCCAGGATAGAACGCCGCCCTCCGGAGGCGGAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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