The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1898
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1140795
End posion on genome 1140718
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ggcaccatgt
tRNA gene sequence 
GGGCCCGTGGCTCAGCCTGGTTAGAGCGCCCGCCTGATAAGCGGGAGGTCCGGGGTTCGA
AGCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
gaatttttgc
Secondary structure (Cloverleaf model)
>At1898	Ile	GAT
                   t      ACCA gaatttttgc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          G A
                    T     G C C C C     A
    C C G A        G      | | | | |     G
  T         C T C G       C G G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTCAGCCTGGTTAGAGCGCCCGCCTGATAAGCGGGAGGTCCGGGGTTCGA
AGCCCCGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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