The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1901
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1181115
End posion on genome 1181038
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
atcgggttat
tRNA gene sequence 
GGGCCGGTAGCTTAGCCTGGTTAGAGCGGCGGACTCTTAATCCGCAGGTCGGGGGTTCAA
ATCCCCCCCGGCCCGCCA
Downstream region at tRNA end position 
gcctccttct
Secondary structure (Cloverleaf model)
>At1901	Lys	CTT
                   t      GCCA gcctccttct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     A
  T         T T C G       G G G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTTAGCCTGGTTAGAGCGGCGGACTCTTAATCCGCAGGTCGGGGGTTCAA
ATCCCCCCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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