The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1902
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1190554
End posion on genome 1190480
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tttttgtaat
tRNA gene sequence 
GCCGGGATAGCCTAGAGGCCAGGCGGGGGACTGCAGATCCCCTTTACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Downstream region at tRNA end position 
aactcatttt
Secondary structure (Cloverleaf model)
>At1902	Cys	GCA
                   t      TCCA aactcatttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      A     T C C G       C C G G G     C
      G     | | | |                 T T
      G     A G G C
        C C        G     TTTAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGAGGCCAGGCGGGGGACTGCAGATCCCCTTTACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK