The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1903
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1190654
End posion on genome 1190568
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tatcgagtgt
tRNA gene sequence 
GCCGCGGTAGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGCGTGGTCCCGCC
GGGGTTCAAATCCCCGCCGCGGCGCCA
Downstream region at tRNA end position 
cactttttgt
Secondary structure (Cloverleaf model)
>At1903	Ser	GCT
                   t      GCCA cactttttgt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGCGTGGTCCCGC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGCGTGGTCCCGCC
GGGGTTCAAATCCCCGCCGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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