The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1904
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1190775
End posion on genome 1190699
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
atgggcttga
tRNA gene sequence 
GCCGGGATAGCCTAGCCTGGTGGGGCGGGGGACTCGTAATCCCCAGGTCCCGGGTTCAAA
TCCCGGTCCCGGCTCCA
Downstream region at tRNA end position 
acaaaaaatt
Secondary structure (Cloverleaf model)
>At1904	Thr	CGT
                   a      TCCA acaaaaaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T G        G     AGGTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGCCTGGTGGGGCGGGGGACTCGTAATCCCCAGGTCCCGGGTTCAAA
TCCCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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