The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1905
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1326096
End posion on genome 1326010
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
tatattggat
tRNA gene sequence
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGCCTGGAGAGCCCGTGGGCGTTTGCCCACC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Downstream region at tRNA end position
atccctttaa
Secondary structure (Cloverleaf model)
>At1905	Ser	GGA
                   t      GCCA atccctttaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    T       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTTTGCCCAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGCCTGGAGAGCCCGTGGGCGTTTGCCCACC
GGGGTTCAAATCCCCGCCCCGGCGCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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