The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1906
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1358033
End posion on genome 1357946
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position
ctttttgtga
tRNA gene sequence
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGCCGGACTTAAGATCCGGTGCCGTAGGGCTGC
GCGGGTTCGAATCCCGCCCCCCGCACCA
Downstream region at tRNA end position
attcttgcat
Secondary structure (Cloverleaf model)
>At1906	Leu	TAA
                   a      ACCA attcttgcat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C C G A        G      | | | | |     G
  T         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGCCGTAGGGCTGC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGCCGGACTTAAGATCCGGTGCCGTAGGGCTGC
GCGGGTTCGAATCCCGCCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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