The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1907
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1379771
End posion on genome 1379695
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
cttcggcggt
tRNA gene sequence 
GCCCCGGTGGCTCAGCCTGGTAGAGCGGCCGCTTGGTAAGCGGCAGGTCCCGGGTTCAAA
GCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
ttctaataaa
Secondary structure (Cloverleaf model)
>At1907	Thr	GGT
                   t      TCCA ttctaataaa
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          G A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G - C
                    C - G
                    C - G
                    G - C
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGCTCAGCCTGGTAGAGCGGCCGCTTGGTAAGCGGCAGGTCCCGGGTTCAAA
GCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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