The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1909
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1380660
End posion on genome 1380584
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
atctctcggt
tRNA gene sequence 
GCCCCGGTAGCCTAGCCTGGTGGGGCGGGGGACTTGTAATCCCCAGGTCGCGGGTTCAAA
TCCCGCCCGGGGCTCCA
Downstream region at tRNA end position 
gcggggccgt
Secondary structure (Cloverleaf model)
>At1909	Thr	TGT
                   t      TCCA gcggggccgt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G T G        G     AGGTC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCCTAGCCTGGTGGGGCGGGGGACTTGTAATCCCCAGGTCGCGGGTTCAAA
TCCCGCCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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