The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1911
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1448168
End posion on genome 1448081
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
gttgaattga
tRNA gene sequence 
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCGGGATTTAGGGTCCCGTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position 
aaatttacat
Secondary structure (Cloverleaf model)
>At1911	Leu	TAG
                   a      ACCA aaatttacat
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     A
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGTAGGGGTTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCGGGATTTAGGGTCCCGTCCCGTAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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