The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1913
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1486374
End posion on genome 1486297
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tagtggaaag
tRNA gene sequence 
GGGCCCGTGGTCTAGACTGGTTATGACGCCGCCCTCACAAGGCGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
tttctaataa
Secondary structure (Cloverleaf model)
>At1913	Val	CAC
                   g      ACCA tttctaataa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C A G A        G      | | | | |     G
  T         T C T G       C G G G G     C
  G           | | |                 T T
  G         T G A C
    T T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGACTGGTTATGACGCCGCCCTCACAAGGCGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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