The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1915
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1640468
End posion on genome 1640392
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cgatagagtg
tRNA gene sequence 
GCCGGGGTGGTGTAGCCTGGTTAGCACAGGGGACTGTGGATCCCCTGGCCCGGGTTCAAA
TCCCGGCCCCGGCCCCA
Downstream region at tRNA end position 
gaaacagact
Secondary structure (Cloverleaf model)
>At1915	His	GTG
                   g      CCCA gaaacagact
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  T         T G T G       C C G G G     C
  G         + | | |                 T T
  G         G C A C
    T T A          A     TGGC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGTGTAGCCTGGTTAGCACAGGGGACTGTGGATCCCCTGGCCCGGGTTCAAA
TCCCGGCCCCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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