The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1918
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 260557
End posion on genome 260634
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
ttcgggtcgt
tRNA gene sequence 
GGGCCGGTAGCTTAGCCTGGTTAGAGCGGCGGACTCTTAATCCGCAGGTCGGGGGTTCGA
ATCCCCCCCGGCCCGCCA
Downstream region at tRNA end position 
aagcgcgttt
Secondary structure (Cloverleaf model)
>At1918	Lys	CTT
                   t      GCCA aagcgcgttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     G
  T         T T C G       G G G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTTAGCCTGGTTAGAGCGGCGGACTCTTAATCCGCAGGTCGGGGGTTCGA
ATCCCCCCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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