The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1922
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 995072
End posion on genome 995157
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ggcgtcgaat
tRNA gene sequence 
GCCGCGGTAGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGCGGTGCCCACCG
GGGTTCAAATCCCCGCCGCGGCGCCA
Downstream region at tRNA end position 
gcttactttc
Secondary structure (Cloverleaf model)
>At1922	Ser	GCT
                   t      GCCA gcttactttc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C G G G G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TGGGCGGTGCCCAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCCTAGCCTGGTAGGGCGCCGGCCTGCTAAGCCGGTGGGCGGTGCCCACCG
GGGTTCAAATCCCCGCCGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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