The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1923
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 995180
End posion on genome 995254
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
cgggttcaat
tRNA gene sequence 
GCCGGGATAGCCTAGAGGCGAGGCGAGGGACTGCAGATCCCTTTCACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Downstream region at tRNA end position 
atcttcttca
Secondary structure (Cloverleaf model)
>At1923	Cys	GCA
                   t      TCCA atcttcttca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      A     T C C G       C C G G G     C
      G     | | | |                 T T
      G     A G G C
        C G        G     TTCAC
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGAGGCGAGGCGAGGGACTGCAGATCCCTTTCACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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