The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1925
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1128153
End posion on genome 1128229
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
cttatcccgt
tRNA gene sequence 
GCCCCGGTAGCCTAGCCTGGCGGGGCGGCGGACTTGTAATCCGCAGGTCGCGGGTTCAAA
TCCCGCCCGGGGCTCCA
Downstream region at tRNA end position 
tcttcaaacc
Secondary structure (Cloverleaf model)
>At1925	Thr	TGT
                   t      TCCA tcttcaaacc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        A      | | | | |     A
    C       T C C G       G C G G G     C
    T       + | | |                 T T
    G       G G G C
      G C G        G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCCTAGCCTGGCGGGGCGGCGGACTTGTAATCCGCAGGTCGCGGGTTCAAA
TCCCGCCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK