The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1927
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1240853
End posion on genome 1240930
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
gaggcgggat
tRNA gene sequence 
GGGCCGGTGGCCTAGTCTGGACGGGGCGTCGGCCTCCGGAGCCGAAGGTCGCGGGTTCGA
ATCCCGCCCGGCCCGCCA
Downstream region at tRNA end position 
tagaaacttt
Secondary structure (Cloverleaf model)
>At1927	Arg	CCG
                   t      GCCA tagaaacttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     C G C C C     A
    C T G A        G      | | | | |     G
  T         T C C G       G C G G G     C
  G         + | | |                 T T
  G         G G G C
    A C G          G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGCCTAGTCTGGACGGGGCGTCGGCCTCCGGAGCCGAAGGTCGCGGGTTCGA
ATCCCGCCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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