The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1930
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1311255
End posion on genome 1311332
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position 
tagcgggcgt
tRNA gene sequence 
GCCCCGGTGGCCTAGTCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGGCGCCA
Downstream region at tRNA end position 
tagaaacttt
Secondary structure (Cloverleaf model)
>At1930	Arg	GCG
                   t      GCCA tagaaacttt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C T G A        G      | | | | |     A
  T         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    C - G
                    G - C
                    A - T
                    G - C
                    G - C
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTGGCCTAGTCTGGATAGGGCGCGAGGCTGCGGACCTCGAGGTCCGGGGTTCAA
ATCCCCGCCGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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