The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1931
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1320077
End posion on genome 1320154
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
agcgggcagt
tRNA gene sequence 
GGACCGGTAGCCTAGCCAGGATAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCGA
AGCCCCGCCGGTCCGCCA
Downstream region at tRNA end position 
tagaaacttt
Secondary structure (Cloverleaf model)
>At1931	Arg	CCT
                   t      GCCA tagaaacttt
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCGGTAGCCTAGCCAGGATAGGGCGGCGGCCTCCTAAGCCGCAGGTCCGGGGTTCGA
AGCCCCGCCGGTCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK