The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1932
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1499113
End posion on genome 1499190
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
tcccagatgt
tRNA gene sequence 
GGGCCGGTGGCCTAGTCTGGACGGGGCGTCGGCCTTCGGAGCCGAAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Downstream region at tRNA end position 
tagaaacttt
Secondary structure (Cloverleaf model)
>At1932	Arg	TCG
                   t      GCCA tagaaacttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  T         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A C G          G     AGGTC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTGGCCTAGTCTGGACGGGGCGTCGGCCTTCGGAGCCGAAGGTCCCGGGTTCAA
ATCCCGGCCGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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