The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1933
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1769612
End posion on genome 1769689
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position
actatcatgc
tRNA gene sequence
GCCCGGGTGGTGTAGCCCGGCCCATCATACGGGACTGTCACTCCCGTGACCCGGGTTCAA
ATCCCGGCCCGGGCGCCA
Downstream region at tRNA end position
tacagccctt
Secondary structure (Cloverleaf model)
>At1933	Asp	GTC
                   c      GCCA tacagccctt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    C C C A        A     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTGGTGTAGCCCGGCCCATCATACGGGACTGTCACTCCCGTGACCCGGGTTCAA
ATCCCGGCCCGGGCGCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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