The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1935
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1913492
End posion on genome 1913569
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
ccagtagggt
tRNA gene sequence 
CCCGCGGTAGCCTAGCCTGGGAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAA
ATCCGGGCCGCGGGACCA
Downstream region at tRNA end position 
ccagaattct
Secondary structure (Cloverleaf model)
>At1935	Tyr	GTA
                   t      ACCA ccagaattct
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G G C C     A
    C C G A        A      | | | | |     A
  T         T C C G       C C C G G     C
  G           | | |                 T T
  G         T G G C
    G A G          G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CCCGCGGTAGCCTAGCCTGGGAGTGGCGGCGGACTGTAGATCCGCAGGTCCCCGGTTCAA
ATCCGGGCCGCGGGACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK