The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1937
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 2024406
End posion on genome 2024482
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tgccatcagt
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGGAGAGCGTCGGCTTTGCAAGCCGAAGGCCCCGGGTTCGAA
TCCCGGCCGGTCCACCA
Downstream region at tRNA end position 
cgaagaggtg
Secondary structure (Cloverleaf model)
>At1937	Ala	TGC
                   t      ACCA cgaagaggtg
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     AGGCC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGCTCAGCCTGGGAGAGCGTCGGCTTTGCAAGCCGAAGGCCCCGGGTTCGAA
TCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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