The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1938
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 2054776
End posion on genome 2054852
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tttggagcgt
tRNA gene sequence 
GGGGCGGTAGCTCAGCCTGGGAGAGCGCCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCTCGCCCCACCA
Downstream region at tRNA end position 
ctttcttgca
Secondary structure (Cloverleaf model)
>At1938	Phe	GAA
                   t      ACCA ctttcttgca
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     G + T          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    T       | | | |                 T T
    G       G A G C
      G G A        G     GTGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCGGTAGCTCAGCCTGGGAGAGCGCCGGACTGAAGATCCGGGTGTCGGGGGTTCAAA
TCCCCCTCGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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