The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1939
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 2054865
End posion on genome 2054942
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position 
ttcttgcagt
tRNA gene sequence 
GCGGTGGTAGTCTAGCCTGGTCTAGGACACCGGCCTTCCAAGCCGGTGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Downstream region at tRNA end position 
caaaacgttt
Secondary structure (Cloverleaf model)
>At1939	Gly	TCC
                   t      ACCA caaaacgttt
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T C T A        A     TGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTGGTAGTCTAGCCTGGTCTAGGACACCGGCCTTCCAAGCCGGTGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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