The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1940
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 86293
End posion on genome 86216
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tacttcgggc
tRNA gene sequence 
GGGCCCGTGGTCTAGACTGGTTATGACGCCGCCCTCACACGGCGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
caacgattct
Secondary structure (Cloverleaf model)
>At1940	Val	CAC
                   c      ACCA caacgattct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C A G A        G      | | | | |     G
  T         T C T G       C G G G G     C
  G           | | |                 T T
  G         T G A C
    T T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGACTGGTTATGACGCCGCCCTCACACGGCGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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