The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1941
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 260446
End posion on genome 260359
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
atttggcaac
tRNA gene sequence 
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCGGGATTGAGGGTCCCGTCCCGCAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position 
caacagccct
Secondary structure (Cloverleaf model)
>At1941	Leu	GAG
                   c      ACCA caacagccct
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     A
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    T C A A        G     TCCCGCAGGGGTTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTTGCCGAGCCTGGTCAAAGGCGCGGGATTGAGGGTCCCGTCCCGCAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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