The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1943
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 307339
End posion on genome 307263
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
ttttaaacgt
tRNA gene sequence 
GCCGGGGTAGCCTAGCTCGGCAGGGCGGCGGACTCGTAATCCGCAGGTCCCGGGTTCAAA
TCCCGGTCCCGGCTCCA
Downstream region at tRNA end position 
ttattattat
Secondary structure (Cloverleaf model)
>At1943	Thr	CGT
                   t      TCCA ttattattat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    T       T C C G       C C G G G     C
    C       + | | |                 T T
    G       G G G C
      G C A        G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGCTCGGCAGGGCGGCGGACTCGTAATCCGCAGGTCCCGGGTTCAAA
TCCCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK