The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1947
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1040863
End posion on genome 1040777
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
ggttaagagc
tRNA gene sequence 
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTCCGCCCACC
AGGGTTCAAATCCCTGCCCCGGCGCCA
Downstream region at tRNA end position 
ttcaagggcc
Secondary structure (Cloverleaf model)
>At1947	Ser	CGA
                   c      GCCA ttcaagggcc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C A G G G     C
    T       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTCCGCCCAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGACTCGAGATCCCGTGGGCGTCCGCCCACC
AGGGTTCAAATCCCTGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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