The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1952
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1323082
End posion on genome 1322995
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tttccctcgc
tRNA gene sequence 
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGGCGGACTTAAGATCCGCTGCCGTAGGGCTGC
GCGGGTTCGAATCCCGTCCCCCGCACCA
Downstream region at tRNA end position 
aaggtttaaa
Secondary structure (Cloverleaf model)
>At1952	Leu	TAA
                   c      ACCA aaggtttaaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C C C     A
    C C G A        G      + | | | |     G
  T         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGCCGTAGGGCTGC
                    G - C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCTGGCCAAAGGGGGCGGACTTAAGATCCGCTGCCGTAGGGCTGC
GCGGGTTCGAATCCCGTCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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