The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1954
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1326676
End posion on genome 1326589
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
gccgactgac
tRNA gene sequence 
GCGGGGGTAGCCGAGCCTGGCCAAAGGCGCGGGATTCAGGGTCCCGTCCCGCAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Downstream region at tRNA end position 
taattacgct
Secondary structure (Cloverleaf model)
>At1954	Leu	CAG
                   c      ACCA taattacgct
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         G C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C A A        G     TCCCGCAGGGGTTC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTAGCCGAGCCTGGCCAAAGGCGCGGGATTCAGGGTCCCGTCCCGCAGGGGTTC
CGGGGTTCAAATCCCCGCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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