The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1955
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1329038
End posion on genome 1328952
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position
tcgggtgtat
tRNA gene sequence
GCCGGGATCGCCTAGCCTGGGATGGCGCGGGCCTTGAGAGCCCGTGGCCGTATGGCCACC
GGGGTTCAAATCCCCGTCCCGGCGCCA
Downstream region at tRNA end position
aaatccctta
Secondary structure (Cloverleaf model)
>At1955	Ser	TGA
                   t      GCCA aaatccctta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G C C C C     A
      C G A        C      | | | | |     A
    C       T C C G       C G G G G     C
    T         | | |                 T T
    G       T G G C
      G G A        G     TGGCCGTATGGCCAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATCGCCTAGCCTGGGATGGCGCGGGCCTTGAGAGCCCGTGGCCGTATGGCCACC
GGGGTTCAAATCCCCGTCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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