The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1962
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 1931485
End posion on genome 1931408
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
ggcttggact
tRNA gene sequence 
GCGGTGGTAGTCTAGCCTGGTCTAGGACACCGGCCTCCCAAGCCGGTAACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Downstream region at tRNA end position 
tcttctcaaa
Secondary structure (Cloverleaf model)
>At1962	Gly	CCC
                   t      ACCA tcttctcaaa
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T C T A        A     TAAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTGGTAGTCTAGCCTGGTCTAGGACACCGGCCTCCCAAGCCGGTAACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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