The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1964
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 182802
End posion on genome 182875
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
cttgcactgt
tRNA gene sequence 
GGGTCCGTAGCTTAGCTAGGTAGAGCGATGGACTCTTAATCCATAGGTCAGGGGTCCAAA
TCCCCTCGGACCCGcta
Downstream region at tRNA end position 
ttaatcatgt
Secondary structure (Cloverleaf model)
>At1964	Lys	CTT
                   t      Gcta ttaatcatgt
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     C - G
                     G - C          T A
                    T     T C C C C     A
      C G A        A      | | | | |     A
    T       T T C G       A G G G G     C
    A       + | | |                 T C
    G       G A G C
      G T A        G     AGGTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTCCGTAGCTTAGCTAGGTAGAGCGATGGACTCTTAATCCATAGGTCAGGGGTCCAAA
TCCCCTCGGACCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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