The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1965
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 232278
End posion on genome 232417
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
ttcggcggaa
tRNA gene sequence 
GGGGACATGGGGTAATGGCATCCTGACGGGCTCCAGACCCGTAGATCTGGGTTCAACTCC
CAGTGTCCCCAttc
Downstream region at tRNA end position 
taattcacgt
Secondary structure (Cloverleaf model)
>At1965	Trp	CCA
                   a      Attc taattcacgt
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     A - T          T C
                    T     G A C C C     A
        A A        G      | | | | |     A
      T     T G G G       C T G G G     C
      G       | | +                 T T
      G     T C C T
        C A        G     AGAT
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGACATGGGGTAATGGCATCCTGACGGGCTCCAGtcaggagatgattagaaacagggt
catctgatttgatgatgagtgactggaactatgatccaggaagagACCCGTAGATCTGGG
TTCAACTCCCAGTGTCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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