The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1967
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 384199
End posion on genome 384270
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
accatttgat
tRNA gene sequence 
GGGCTCGTAGTCTAGTGGTATGATGTCGCCCTGACACGGCGGAGGTCACCGGTTCGAATC
CGGTCGGGCCCActt
Downstream region at tRNA end position 
taagtattaa
Secondary structure (Cloverleaf model)
>At1967	Val	GAC
                   t      Actt taagtattaa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     T G G C C     A
        G A        A      | | | | |     G
      T     T C T G       A C C G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     AGGTC
                    T + G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGTCTAGTGGTATGATGTCGCCCTGACACGGCGGAGGTCACCGGTTCGAATC
CGGTCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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